Package: scicalc 0.3.0

Matthew Smith

scicalc: Scientific Calculations for Quantitative Clinical Pharmacology and Pharmacometrics Analysis

Utility functions helpful for reproducible scientific calculations.

Authors:Matthew Smith [aut, cre], Jacob Dumbleton [aut], Jenna Johnson [aut], Devin Pastoor [aut], Wesley Cummings [ctb], Emily Schapiro [ctb], Ryan Crass [ctb], Jonah Lyon [ctb], Elizabeth LeBeau [ctb]

scicalc_0.3.0.tar.gz
scicalc_0.3.0.zip(r-4.7)scicalc_0.3.0.zip(r-4.6)scicalc_0.3.0.zip(r-4.5)
scicalc_0.3.0.tgz(r-4.6-any)scicalc_0.3.0.tgz(r-4.5-any)
scicalc_0.3.0.tar.gz(r-4.7-any)scicalc_0.3.0.tar.gz(r-4.6-any)
scicalc_0.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
scicalc/json (API)

# Install 'scicalc' in R:

install.packages('scicalc', repos = c('https://a2-ai.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/a2-ai/scicalc/issues

Pkgdown/docs site:https://a2-ai.github.io

On CRAN:

3.95 score 3 stars 5 scripts 55 exports 40 dependencies

Last updated from:93424b6a41. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	148
source / vignettes	OK	223
linux-release-x86_64	OK	149
macos-release-arm64	OK	84
macos-oldrel-arm64	OK	76
windows-devel	OK	82
windows-release	OK	134
windows-oldrel	OK	83
wasm-release	OK	119

Exports:%>%aegfr agec aibw bbmi bhfc bmi bmic brfc bsa categorize check_for_unique_units ckdepi_2009_egfr ckdepi_2021_egfr ckdepi_2021_egfr_cystatin convert_alb convert_bili convert_creat cor_df crcl cv dubois_bsa egfr ethnicn geom_cv geom_mean geom_sd get_unique_units_df hfc ibw is_asian is_black is_female is_hispanic_or_latino is_not_hispanic_or_latino is_other is_white mdrd_egfr mosteller_bsa racen read_csv_with_hash read_excel_with_hash read_file_with_hash read_hashed_file read_parquet_with_hash read_pzfx_with_hash read_sas_with_hash read_xpt_with_hash rfc round_like schwartz_egfr sexf write_csv_with_hash write_file_with_hash write_parquet_with_hash

Dependencies:arrow assertthat backports bit bit64 cellranger checkmate cli clipr cpp11 crayon digest dplyr forcats fs generics glue haven hms lifecycle magrittr pillar pkgconfig prettyunits progress purrr R6 readr readxl rematch rlang stringi stringr tibble tidyselect tzdb utf8 vctrs vroom withr

scicalc

Scicalc | Reading in data | Simple data analysis | Writting data | Reading in derived data

Rendered fromscicalc.Rmdusingknitr::rmarkdown

Last update: 2026-01-09
Started: 2024-08-22

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Calculate Absolute eGFR	aegfr
Categorize Age	agec
Calculate Adjusted Ideal Body Weight	aibw
Calculate Body Mass Index	bmi
Categorize Body Mass Index	bmic
Calculate Body Surface Area	bsa
Categorize Continuous Variable into Quantile Bins	categorize
Check for Unique Units per Parameter	check_for_unique_units
Calculate eGFR Using CKD-EPI 2009 Equation	ckdepi_2009_egfr
Calculate eGFR Using CKD-EPI 2021 Creatinine Equation	ckdepi_2021_egfr
Calculate eGFR Using CKD-EPI 2021 Cystatin Equation	ckdepi_2021_egfr_cystatin
Convert Albumin Concentration Units	convert_alb
Convert Bilirubin Concentration Units	convert_bili
Convert Serum Creatinine Concentration Units	convert_creat
Convert Data Frame to Correlation Matrix	cor_df
Calculate Creatinine Clearance Using Cockcroft-Gault Equation	crcl
Calculate Coefficient of Variation	cv
Calculate Body Surface Area Using Du Bois Equation	dubois_bsa
Calculate Estimated Glomerular Filtration Rate	egfr
Convert Ethnicity to Numeric Code	ethnicn
Calculate Geometric Coefficient of Variation	geom_cv
Calculate Geometric Mean	geom_mean
Calculate Geometric Standard Deviation	geom_sd
Get Unique Parameter-Unit Combinations	get_unique_units_df
Categorize Hepatic Function	hfc
Calculate Ideal Body Weight	ibw
Check if Race is Asian	is_asian
Check if Race is Black	is_black
Check if Sex is Female	is_female
Check if Ethnicity is Hispanic or Latino	is_hispanic_or_latino
Check if Ethnicity is Not Hispanic or Latino	is_not_hispanic_or_latino
Check if Race is Other	is_other
Check if Race is White	is_white
Calculate eGFR Using MDRD Equation	mdrd_egfr
Calculate Body Surface Area Using Mosteller Equation	mosteller_bsa
Convert Race to Numeric Code	racen
Read CSV File with Hash Verification	read_csv_with_hash
Read Excel File with Hash Verification	read_excel_with_hash
Read Data File with Hash Verification	read_file_with_hash
Read File with Required Hash Match	read_hashed_file
Read Parquet File with Hash Verification	read_parquet_with_hash
Read Prism PZFX File with Hash Verification	read_pzfx_with_hash
Read SAS File with Hash Verification	read_sas_with_hash
Read XPT File with Hash Verification	read_xpt_with_hash
Categorize Renal Function	rfc
Round to Significant Digits	round_like
Calculate eGFR Using Schwartz Equation	schwartz_egfr
Convert Sex to Numeric Code	sexf
Write CSV File with Hash Output	write_csv_with_hash
Write Data File with Hash Output	write_file_with_hash
Write Parquet File with Hash Output	write_parquet_with_hash